rs52091232 SNP Detail

Summary

• ID
  rs52091232
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133865947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGTCTCAA TAGTAATGAT GATGATGATG ATGATGATGA
  TGGTGATGGT GATGGTGATG GTGATGGTGA TGGTGATGAT GATGATGATA TAATAGCAAA
  G
  TGAACCTGAC ACCATGTTTG TACAAACTGA CACATGAGAT GCCGTGAACA GGGGAACCTT
  ATACCTAAGC ATATCATCCT ACTGATATGA GACTTAAAT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss134469288	ENSMUSSNP492384	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52091232					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133865947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22945	CpG island 22945	1181 bp distal
Nxf2	nuclear RNA export factor 2	444 bp upstream
Rr693643	regulatory region 693643	1313 bp distal
Rr693644	regulatory region 693644	1212 bp distal
Tssr164159	transcription start site region 164159	472 bp upstream
Tssr164160	transcription start site region 164160	431 bp upstream