rs52091349 SNP Detail

Summary

• ID
  rs52091349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118594260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCT TTTGTCTACA CACACATACA
  Y
  ACACACACAC ACACACACAC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147312009	ENSMUSSNP3920160	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52091349					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118594260 () rs orientation: forward

Symbol	Name	Function Class
Ccdc9b	coiled-coil domain containing 9B	1118 bp upstream
Rr367276	regulatory region 367276	992 bp downstream
Rr397216	regulatory region 397216	829 bp upstream
Rr563325	regulatory region 563325	1384 bp distal
Rr563326	regulatory region 563326	628 bp distal
Rr563327	regulatory region 563327	411 bp proximal
Rr563328	regulatory region 563328	896 bp proximal
Rr563329	regulatory region 563329	1527 bp proximal
Tssr25793	transcription start site region 25793	1113 bp upstream