rs52092379 SNP Detail

Summary

• ID
  rs52092379
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:86543248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGTAGATCGG GCTGCACCTG GGAGGAACTG AGAATGAGAT
  TTGTCCTCCA AAATAAAGCT GGTGGGTTTT TGGTTTTGTT CTTTTTTTTT TTTTTTTTTT
  K
  GGGGGGGGGG GGTAGAAGTT TCTGCAGATG ATGGTCCCCA GATAGAAAGG AGAGAGAGAG
  AGAATCAGAG AGAGAGAATC TACTTCCAGA CTGGCAGAAG A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147220953	ENSMUSSNP5034767	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52092379					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86543248 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2068	CpG island 2068			908 bp distal
Gm54730	predicted gene, 54730			1936 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1			1940 bp upstream
Rr436508	regulatory region 436508			1530 bp distal
Rr436509	regulatory region 436509			47 bp distal
Tssr95006	transcription start site region 95006			1506 bp downstream
Tssr95007	transcription start site region 95007			1492 bp downstream
Tssr98789	transcription start site region 98789			1986 bp upstream
Tssr98790	transcription start site region 98790			1913 bp upstream
Tssr98791	transcription start site region 98791			1892 bp upstream
Ttc41	tetratricopeptide repeat domain 41			Intron
				Noncoding-Transcript-Variant