rs52092552 SNP Detail

Summary

• ID
  rs52092552
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151254103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTAAGTTTAG ATTAACACTA CATTTGGGGG GGGGTTGGTT
  TTTTTTGTTT TGGTTTGGTT TGGTTTTTCA AGACAGGGTT TCTCTGTGTA GCCCTGGCTG
  G
  CCTCGAACTC AGAAATCCGC CTGCCTCTGC CTCCCGAGTG CTGGGATTAA AGGCGTGCGC
  CACCATGCTT ATCCTAAAAA CCACTTAGAC AAACTATGAT C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145719010	ENSMUSSNP577189	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52092552					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151254103 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420286	regulatory region 420286			814 bp distal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant