rs52094188 SNP Detail

Summary

• ID
  rs52094188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72570644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCAAA AACTGCAGCC
  CAAGGATTCG TGGCACGCAA AACCGTCTGT TACAGAGGAA CAACTTAATC GCGACTTTGC
  CTCGCGCTCG CTGAAAGTGA GGCCCTCTTG AGGGAGGGCT TCGATGGAGC TGGCGGTCGT
  CTCAAATGGG TGGGGCATTA GAGACTTCGA AGTGTTTAAC AGTGACCCTT TCAGATTGTG
  Y
  GTGTGCGCGC CTGCGCGTGC GCGCCTGCCT GTGTGTGTGC CTGTGTGTGC CTGTGTGAAT
  CCAATCTCCG GGTTTCTGTT ACTTAATCTA GTGGTCACAT GTGCATTTTA TCAAGATTGG
  GCTCAATTAG CTAGAAATTC CTAACCCCCC CAATTTTTTA TTCCTTTCTC AGGTACCTCC
  AAACACTATT GTAATGGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136623045	ENSMUSSNP2446774	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52094188					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72570644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	within coordinates
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	within coordinates
Rr682797	regulatory region 682797	870 bp distal
Rr682798	regulatory region 682798	1462 bp proximal
Rr682799	regulatory region 682799	1499 bp proximal
Tssr86018	transcription start site region 86018	1350 bp downstream
Tssr86019	transcription start site region 86019	950 bp downstream
Tssr86020	transcription start site region 86020	894 bp downstream
Tssr86021	transcription start site region 86021	839 bp downstream
Tssr86022	transcription start site region 86022	393 bp upstream
Tssr90495	transcription start site region 90495	92 bp upstream
Tssr90496	transcription start site region 90496	65 bp upstream
Tssr90497	transcription start site region 90497	36 bp upstream