rs52095494 SNP Detail

Summary

• ID
  rs52095494
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTTAGA AGTTTGGACC
  ATTTGATCGC CCTCTTGGTG AGTATCACCA GGTACGTGGA AAAGAATTCT TCATAAGCCG
  CATAGTCAAA GTCTTCGGGC CTTTCAAACC CATACGGATC GATCCTACAA ACAAAAAGAA
  CCTGTTTCCC CGAACCAAGT TTCCGCGCCT GCGGGGATGC GGCTGGGGTC CAAGAGCTCC
  S
  ACACCCGACA CCCCTCGGTC CGCCCCTCCG TCCATCCTCA GTTCACCTTC CCTTCCTCTC
  TTCCTCCCCT CCTCCATCCC CTCCACCCCC TCATGCCCCT CGCTCTCCGT GGACCAGAGC
  GCGTCCCCCG CGCAGCATCG ACTGGCTCAG ACCCAGTCCG GAGAGGGCGC CCAGCACCCC
  GCGCGCGCGG CCTCCGCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss148683936	ENSMUSSNP419119	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss322505052	CHEV_8_13200277	CHEVERUD	SCREENING_POP	f	SNP		G		C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs52095494					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810030D12Rik	RIKEN cDNA 2810030D12 gene			505 bp upstream
Cpgi20110	CpG island 20110			within coordinates
Gm56825	predicted gene, 56825			365 bp downstream
Grtp1	GH regulated TBC protein 1			Intron
				Noncoding-Transcript-Variant
Rr659872	regulatory region 659872			709 bp distal
Rr659873	regulatory region 659873			248 bp proximal
Rr659874	regulatory region 659874			688 bp proximal
Rr659875	regulatory region 659875			1207 bp proximal
Rr659876	regulatory region 659876			1595 bp proximal
Rr659877	regulatory region 659877			1946 bp proximal
Tssr76386	transcription start site region 76386			499 bp upstream
Tssr76387	transcription start site region 76387			669 bp upstream
Tssr80428	transcription start site region 80428			299 bp downstream
Tssr80429	transcription start site region 80429			1136 bp downstream