rs52096053 SNP Detail

Summary

• ID
  rs52096053
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82945327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGGTA AGAGATGCTG
  CTTTTTAGGA CGTGAAGTCA TCTCCCCACC CCCATCTCTG TAGTGTTACA GTATTTATTA
  ACCTTATGTT GTTCTGTTTT ATATACATTG AATATCATTT TTAAGATGAG ATGTTCAGCT
  AACATTATTT TTCTATCCCA TTACCATTTT CTTTTCTCCT AAATTCTTTT TCTTTTCTTG
  S
  TGAGTACGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG ACCCCAGACC TAGAGTTACA TGCAGTTGTA
  AGTTTCCCAA TCAAGTACTG GGAAAGAACA CCAGTAAATG TATTTTATTT TTAAATTCTT
  ACTTTATTTT CAATTATGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60904301	NES15955778	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52096053					SNP	G	G	G	G	G	G	G	G	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904301	NES15955778	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82945327 () rs orientation: forward

Symbol	Name	Function Class
D6UmiJ16	DNA segment, Chr 6, University of Michigan Jones 16	within coordinates
M1ap	meiosis 1 associated protein	within coordinates
Rr632712	regulatory region 632712	1008 bp proximal