rs52096169 SNP Detail

Summary

• ID
  rs52096169
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCAGTGAG AGACAGAGGG ATAGAGAGAG ACAGAGAGTC
  AGAGAGACAG AGACAGATAG AGAGACAGAA AGACAGAGAC AGAGAGGTGG GGGGAGGAGA
  G
  AGGGGGAGAC AGAGGGACAG AGAGACAGAA GGACAGAGAA ACTGCTAATA AACAAACACA
  TTGACATACC ACTCCCCTCT GCCATGATAC ACATATGCA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320607397	CHEV_2_164890757	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52096169					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907177 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21707	transcription start site region 21707	1688 bp downstream
Tssr21708	transcription start site region 21708	1094 bp downstream
Tssr21709	transcription start site region 21709	1052 bp downstream
Tssr21710	transcription start site region 21710	318 bp downstream
Tssr21711	transcription start site region 21711	255 bp downstream
Tssr21712	transcription start site region 21712	232 bp downstream
Tssr21713	transcription start site region 21713	444 bp upstream
Tssr21714	transcription start site region 21714	1402 bp upstream
Tssr21715	transcription start site region 21715	1448 bp upstream
Tssr21716	transcription start site region 21716	1502 bp upstream
Tssr21717	transcription start site region 21717	1589 bp upstream
Tssr21718	transcription start site region 21718	1635 bp upstream
Tssr21719	transcription start site region 21719	1726 bp upstream
Tssr21720	transcription start site region 21720	1929 bp upstream
Tssr21721	transcription start site region 21721	1972 bp upstream
Tssr27603	transcription start site region 27603	108 bp downstream