rs52096817 SNP Detail

Summary

• ID
  rs52096817
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19319994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCGCAAACC TGGCTCCTGC CCTTCAGACA ATTATAGTTC
  ATATTAACCA AATGGCTGCA AACAAATACC AAATTGCTAG AAACGGAAAA AGAAACAAAA
  S
  AAAACAGAAT AACTCTAGTG CAGAGATGGG TCAGACAAGG CTGCAGGAGG AACACACGCC
  AGTCCATGCA GAACTGTTGG GAACCTGTGC TAAAGAGTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss134666394	ENSMUSSNP1186165	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss320678294	CHEV_3_19165830	CHEVERUD	SCREENING_POP	f	SNP			C		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52096817					SNP	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19319994 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573967	regulatory region 573967			709 bp distal
Tssr32690	transcription start site region 32690			891 bp upstream
Tssr32691	transcription start site region 32691			856 bp upstream
Tssr32692	transcription start site region 32692			825 bp upstream
Tssr32693	transcription start site region 32693			807 bp upstream
Tssr32694	transcription start site region 32694			721 bp upstream