rs52097117 SNP Detail

Summary

• ID
  rs52097117
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:24182393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gctgaacca ctgaattcca ggttcagaga
  gagaaagtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtga gagagagaga gagagagaga
  gagagagaga gagagagaca gagagacaga gagacagaga gacagagaga aagagagaga
  G
  agtcaaaaac taaggtggag agctattgag gaagatactt gttatcagca tctggcttct
  gcatcacacg cacatgcgcg cGTGCACACA CGCGCACACA CACACAAGAG CATGAGCGCA
  TACATACCAC AGGTAATTGT TCCTTAGTGT                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325557933	CHEV_18_24207837	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52097117					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:24182393 () rs orientation: forward

Symbol	Name	Function Class
Rr393422	regulatory region 393422	1434 bp upstream
Rr405565	regulatory region 405565	803 bp upstream
Rr534881	regulatory region 534881	1506 bp distal
Rr534882	regulatory region 534882	1633 bp distal
Rr534883	regulatory region 534883	631 bp proximal
Rr534884	regulatory region 534884	750 bp proximal