rs52097466 SNP Detail

Summary

• ID
  rs52097466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACACTC ACAGCATTTT
  GAGGTCATTT CTCTGTGTTT CTTGCTGGGA GCTCCCAGCC ACTGCGTCTG CTCTGCCATG
  GTGGACTCTC ATCCCTCTGG GACCATAAAC CCAAATAATA ATTTTTATTT TTATTTATTA
  TTATTATTAT TATTATTATT ATTATTATTA TTATTATTAT TTTCGAGACA GGGTTTCTCT
  R
  TATAGCCCTG GCTGTCCTGG AACTTATTTT GTAGACCAGG CTGACCTCGA ACTTAGAAAT
  CCGCCTGTCT CTGCCTCCCG AGTGCTGGGA TTAAAGGCAT GCGTCACCAC TCCTGGCCAA
  ATAATAAATT TATAAGTTTA TTTATTAATG AATATTATTA TGCATAGATT TATCACAGCC
  ATGGAGAAGT AGCTTAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148084620	ENSMUSSNP2185025	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321435531	CHEV_4_152022446	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52097466					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	1101 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	194 bp distal
Rr93365	regulatory region 93365	794 bp distal
Rr97434	regulatory region 97434	145 bp distal