rs52098374 SNP Detail

Summary

• ID
  rs52098374
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148792173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTATATG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTATGTATG TGTGTGTGTG TGTGTGTGTA TATATATTCT TACTGAGCCA ACCAGAATCT
  K
  AACTGTTGCT TTTTAAAACG CTTTTGTAGC CAAACAGATG TATTTCTAAA TTTTGCTTGC
  GTTTATTCAC TGGCTTCTAG GCTATATTTA GGATCCATTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61098064	NES16608517	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs52098374					SNP	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098064	NES16608517	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148792173 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587257	regulatory region 587257	1027 bp distal
Rr587258	regulatory region 587258	220 bp proximal
Rr587259	regulatory region 587259	827 bp proximal
Rr587260	regulatory region 587260	1128 bp proximal
Rr587261	regulatory region 587261	1886 bp proximal