rs52098487 SNP Detail

Summary

• ID
  rs52098487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57311303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCAGCT CTGACTTACC
  GCCATGAAGA GTGCAGAGGA GGTCTCACTG TCAATGTCGC TCTCTTCTGA GCTGTCTGAG
  TCATCACTGC TGTCTGCACA GGGCAGATAA GGACCATAAG CAGAGACCCC AGACAGAGCC
  TACCCATCAG CACCCATGAG CAGGGAGGGC CAAAGGACCA GGAGTATACT GGCCATCATC
  R
  CCCACCTTTC CTGCGCTTCT TCTCTTGTGG GGTAGGGGCC TTCTTCTCTT CTTCCTCCTC
  CTTGTCCTCC TCGGGGGGCT TCTCCTCCTC ACTCTCCTCA CTGCTCTCGC TCTGCTCATC
  CACCCCTGGG ACACAGGTCA CATGGGTGAG CAGTGGCAAC TTCTGAGCGC ACTCCCACCC
  ACTGGTTGGT CCCTAACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62804081	NES17359698	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52098487					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62804081	NES17359698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57311303 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f1	general transcription factor IIF, polypeptide 1	within coordinates
Tssr148848	transcription start site region 148848	115 bp downstream
Tssr148849	transcription start site region 148849	387 bp downstream
Tssr148850	transcription start site region 148850	507 bp downstream
Tssr148851	transcription start site region 148851	561 bp downstream
Tssr148852	transcription start site region 148852	1146 bp downstream