rs52098695 SNP Detail

Summary

• ID
  rs52098695
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128677031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CTTTTCGTTG TTGTGATGAG
  K
  ATGGAACCCA GCGCCTTTTA CACAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss60795876	NES16470127	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		T		G
ss319966905	CHEV_1_130645871	CHEVERUD	SCREENING_POP	f	SNP				G		G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs52098695					SNP	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795876	NES16470127	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128677031 () rs orientation: forward

Symbol	Name	Function Class
Gm29599	predicted gene 29599	1632 bp upstream
Gm70593	predicted gene, 70593	within coordinates
Gm70801	predicted gene, 70801	1748 bp upstream
Tssr8546	transcription start site region 8546	1594 bp downstream
Tssr13487	transcription start site region 13487	1743 bp upstream