rs52098787 SNP Detail

Summary

• ID
  rs52098787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69913684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGGGAAG TGGAGGCAGG AGAATTAGGA GTTTCTCAAA
  GTCACCCTCA GCTACATAAA GAGTTTGGGA CCAGTCTATG TTACATTGAG ACTCCAGCCT
  Y
  CGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGACACAC ACAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132364063	ENSMUSSNP93255	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323732629	CHEV_11_69836360	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52098787					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69913684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	997 bp distal
Cpgi3169	CpG island 3169	993 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1763 bp downstream
Rr402686	regulatory region 402686	1396 bp downstream
Rr450198	regulatory region 450198	1871 bp distal
Rr450199	regulatory region 450199	1436 bp distal
Rr450200	regulatory region 450200	814 bp distal
Rr450201	regulatory region 450201	667 bp proximal
Tssr102634	transcription start site region 102634	1064 bp upstream