rs52099809 SNP Detail

Summary

• ID
  rs52099809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46321531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGCAAG TGGCACTGAT
  AGACATGGAG ACTTGTGGCT TGGAGGCAAG GCAGAGTGTG ACAGAGGCAC AGAGAGGGAA
  TTTGGAATAA GCACGGAAGC GTGGGTTAGG GCTGTGGGGA ACATGGTCCT TAGCATCCTT
  GTTTATCCCA GCTTCTTGTG GCAGTGTTTC TTTTTAAATT TTAATTAATG AATTCACTTA
  Y
  TTACTTTTAC ATCCAGACTG CGGTTTTTCG TCCTTCCTCT CCTCTCAGTC CTTCCTCCAC
  GCCTTCTCTC TCCTCCATGC ATTCCTCTCC CCTTTCTCTT CAGAAAAGGG GAGGCCCGTG
  GACATACTTC TAATGTTTCA GTTAACAGCC CCCATGTCTG CTGGGCATGG GGCTGGGATG
  ATGGCTCATC AGATAAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149177894	ENSMUSSNP1182891	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52099809					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46321531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tph1	tryptophan hydroxylase 1			Intron
				Splice-Site
Tssr72530	transcription start site region 72530			191 bp downstream
Tssr72531	transcription start site region 72531			277 bp downstream
Tssr72532	transcription start site region 72532			392 bp downstream
Tssr72533	transcription start site region 72533			404 bp downstream
Tssr72534	transcription start site region 72534			420 bp downstream
Tssr72535	transcription start site region 72535			447 bp downstream