rs52100465 SNP Detail

Summary

• ID
  rs52100465
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141390159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TACTCATCTT TAAGGCCAGC ACTCTGGAGG GAGAGTTTGA
  GGTTAGCCTT GTCTGTATAG TGAGACTGTT AGAAAAGAAA AGAAAAGAAA AGAAAAGAAA
  M
  GAAAAGAAAA GAAAAGAAAA GAAAAGAAAA GCAAGAAAGA AGAGGGCCAG AGAAATGCTT
  CAGTGGGTGA AGGCATTGCT GCCAAAACTT ACACATTGAG T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147741768	ENSMUSSNP2333229	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52100465					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141390159 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54266	predicted gene, 54266			1247 bp upstream
Gm70264	predicted gene, 70264			1810 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2			Intron
				Noncoding-Transcript-Variant
Rr603850	regulatory region 603850			757 bp proximal
Rr603851	regulatory region 603851			1260 bp proximal
Rr603852	regulatory region 603852			1360 bp proximal
Tssr40091	transcription start site region 40091			1339 bp upstream
Tssr40092	transcription start site region 40092			1393 bp upstream
Tssr44355	transcription start site region 44355			1151 bp downstream
Tssr44356	transcription start site region 44356			1215 bp downstream