rs52100722 SNP Detail

Summary

• ID
  rs52100722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAATCATT ATTAATAATA
  ATTTATCATC ATAAGGTATG ACCAATGAAA AAAAGACACA GGTACTAACT AGGAGGTTCC
  AAAATGAAAG GAACGAAGTT GTGAAGTTCA GCACACCGAG ACCAACCACT GGGGGGCAGC
  AGCAGAGCAG CAGAAAGTCA TCTGTCTAGA AGCTAGGAGG GCTGCTTAGC ACTCCATCTC
  Y
  ATCTCTAAGA AGCTATTCAA AACACAAACA AAAAAGCAGT ATAGTATACA CAGCTGAAAA
  TTAATTATAT TAAAATTAAA AATAATACTT TTGGCCTAAG AAAATATGGA AATGAACACC
  TGCAGTTCGT GGAAATACAA ACTGGTACAG ACTTTGAAAT TTTGGCAAAA TGCATAAAGT
  AGCTAGAGAT GGTGGTACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147541636	ENSMUSSNP6050679	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321351237	CHEV_4_134775810	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52100722					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947206 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Tssr43965	transcription start site region 43965	1241 bp upstream