rs52100972 SNP Detail

Summary

• ID
  rs52100972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124794692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCAGACATGC TAGCATAACA GGCATGATGA CAGCAGAACG
  CTCTAGCTAC GAGCCGGATC TTTGGATGCA TTGTTTTATT TATTTATTTA TTTATTTATT
  Y
  ATTTATTTAT TTATTTATTT ATTAAAAACT GGGAGCTGGG TGTGATGGCA CACGCCTTTA
  ATCCCAGGAC TCAAGAGGCA GGGAGTCAGG AGGATCTCTG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145839269	ENSMUSSNP1796650	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52100972					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124794692 () rs orientation: forward

Symbol	Name	Function Class
Gm29897	predicted gene, 29897	within coordinates
Rr672611	regulatory region 672611	708 bp distal
Tssr80018	transcription start site region 80018	1165 bp downstream
Tssr80019	transcription start site region 80019	1157 bp downstream
Tssr80020	transcription start site region 80020	814 bp downstream