rs52101466 SNP Detail

Summary

• ID
  rs52101466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC CTCTTCAACA AAGTGAGTTC
  Y
  AGGACAGCCA GAGCTACAGA GAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132241320	ENSMUSSNP6541069	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323699331	CHEV_11_59621680	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52101466					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	1358 bp proximal
Flcn	folliculin	within coordinates
Gm16062	predicted gene 16062	1902 bp upstream
Rr448261	regulatory region 448261	185 bp proximal
Rr448262	regulatory region 448262	346 bp proximal
Rr448263	regulatory region 448263	1400 bp proximal
Rr448264	regulatory region 448264	1684 bp proximal
Rr448265	regulatory region 448265	1828 bp proximal
Tssr101863	transcription start site region 101863	1929 bp upstream
Tssr108246	transcription start site region 108246	1596 bp downstream
Tssr108247	transcription start site region 108247	1848 bp downstream