rs52101481 SNP Detail

Summary

• ID
  rs52101481
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137191752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTGTTGTATA ATATAATTGC TTAATTATAT AATTTTAAAT
  GTTATATATG TATATATGTA TGTATGTATG TATATATATG TGTGTGTGTA TATTATATAT
  A
  TGTATATATA TACATACATG TACATATATA TATACATATA TATATATATA TATACATACA
  CACACACACA CAATGCTTTT GGAGCTTAGA GATATCTTGG G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144526884	ENSMUSSNP660518	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52101481					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137191752 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr49319	transcription start site region 49319	1948 bp downstream
Tssr49320	transcription start site region 49320	1936 bp downstream
Tssr53956	transcription start site region 53956	1983 bp upstream
Tssr53957	transcription start site region 53957	1966 bp upstream
Tssr53958	transcription start site region 53958	1911 bp upstream
Tssr53959	transcription start site region 53959	1898 bp upstream
Tssr53960	transcription start site region 53960	1832 bp upstream
Tssr53961	transcription start site region 53961	1733 bp upstream
Tssr53962	transcription start site region 53962	1715 bp upstream
Tssr53963	transcription start site region 53963	1676 bp upstream
Tssr53964	transcription start site region 53964	1636 bp upstream
Tssr53965	transcription start site region 53965	1611 bp upstream
Tssr53966	transcription start site region 53966	742 bp upstream
Tssr53967	transcription start site region 53967	709 bp upstream