rs52101776 SNP Detail

Summary

• ID
  rs52101776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44660422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCTCTCT CTAAATTAAT
  TAAGTTGATT AGGGCATTTG AAAGTTTGAA CATGGGCATT TATGTGAGCA AAATTCTTCC
  TAGAACCCAT CCCTCCACTG TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCA
  CACACACACA CACACACACA CACACATGCG TGCACACATG AACATGCACA TGCACTTCTG
  R
  GTTTGTCGTT CATGGCTTGA ACTTCTATAG ACAGCATGAT AGTAGTTTTA GCAAAAGAAG
  GAAGTTTGTG GGCAGACAAG ATAGTCTGTG GGGTTCTCCA TCTACCATCT TAACAATAAT
  GCCTAATGTT ATTGCCAACC CCAGCCTCAC ACAGCCAGCT CAGAGGGCAA CTGCACAACT
  CAAAGCCACT CCCAGCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61784007	NES17519043	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52101776					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61784007	NES17519043	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44660422 () rs orientation: forward

Symbol	Name	Function Class
Gm40930	predicted gene, 40930	within coordinates
Rr283665	regulatory region 283665	223 bp distal
Rr283666	regulatory region 283666	within coordinates
Rr403740	regulatory region 403740	179 bp upstream