rs52102138 SNP Detail

Summary

• ID
  rs52102138
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGCTTCTC TCCTTTCTAC CTCTCTCCTT CCCTCCCGTC
  CCCTTCTCTC TCCTCACCTC TCCCTTCTCT TCTTTCCGCT CCCCCCTGGC CCCCACCTCC
  T
  TAGAGATTAC TAAAGCAGAA GTACCGTTCT GCGAACTTCC AGGAGAATTT CAACATTTAG
  AAGCCAACTC CTGCTTAGAT CTCACCTGCT ACACTAGGG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136852147	ENSMUSSNP626744	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52102138					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1434 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	1180 bp downstream
Rr685464	regulatory region 685464	1745 bp distal
Rr685465	regulatory region 685465	1244 bp distal
Rr685466	regulatory region 685466	within coordinates
Sox14	SRY (sex determining region Y)-box 14	1734 bp upstream
Tssr91083	transcription start site region 91083	1711 bp upstream
Tssr91084	transcription start site region 91084	1692 bp upstream