rs52102177 SNP Detail

Summary

• ID
  rs52102177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70935731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC AGTCAGCCAA CCATGACCTG
  Y
  CCCAATGTAG CCCACTGCCC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146739056	ENSMUSSNP1290484	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320335458	CHEV_2_70943444	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52102177					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70935731 () rs orientation: forward

Symbol	Name	Function Class
Rr397033	regulatory region 397033	1742 bp downstream
Rr558671	regulatory region 558671	1767 bp distal
Rr558672	regulatory region 558672	910 bp distal
Rr558673	regulatory region 558673	383 bp distal