rs52102602 SNP Detail

Summary

• ID
  rs52102602
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15077353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTCTGTTTCT CTGTCTGTCT
  C
  TCTCTTTCTG TCTCTCTGTC TCTGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss147915683	ENSMUSSNP1794522	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs52102602					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15077353 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	within coordinates
Gm17019	predicted gene 17019	1611 bp downstream
Gm71745	predicted gene, 71745	within coordinates
Rr111907	regulatory region 111907	1848 bp proximal
Rr121520	regulatory region 121520	1939 bp distal
Rr121523	regulatory region 121523	731 bp proximal
Rr121525	regulatory region 121525	1947 bp proximal
Rr128307	regulatory region 128307	within coordinates