rs52102928 SNP Detail

Summary

• ID
  rs52102928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135286026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA CAATAATAAA AAACTAATAA
  R
  ACCCCAGAAA TGTTTTAATA AATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133802823	ENSMUSSNP118125	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321986311	CHEV_6_135259046	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52102928					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135286026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	903 bp proximal
Gm36640	predicted gene, 36640	within coordinates
Pbp2	phosphatidylethanolamine binding protein 2	101 bp downstream
Tssr63760	transcription start site region 63760	1321 bp downstream
Tssr63761	transcription start site region 63761	1346 bp downstream