rs52104376 SNP Detail

Summary

• ID
  rs52104376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107342749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCGAAA CGCATGCGTG
  CTGTTTGTAA ATTATTCCCC TAACCCCTTG GTTAAAAGAA CAGGGCCTCG GGCTGGAGAG
  ATGGCTCAGC GGTTAAGAGT GGTAAAGATG ACTGCTCTTC CAGAGGTCCT GAGTTCAATT
  CCCAGCAACC ACGGGGTGGC TCACAACCCT CTGTAATAGG ATCCAATACC TTCTTCTGGT
  R
  TGTCTGAAGA CAGCTGCAGT GTACTCATAT ACATTAAATA AATAAATAAA TAAATAAATA
  AATAAATCTT TTAAGAAAAA AGGACAGGGT CCTGCTGGGA GGAGGTTAAC TCACAACACT
  TCTTTTGAAA TGTGAAGGCA TTAAACCAAA CTGCTGCTGT TGGTGGAGGT TTCTCCATGG
  CACCCTCCTA TCCATATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135583999	ENSMUSSNP2562604	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52104376					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107342749 () rs orientation: forward

Symbol	Name	Function Class
Rr582971	regulatory region 582971	1339 bp distal
Rr582972	regulatory region 582972	1308 bp distal
Rr582973	regulatory region 582973	1032 bp proximal