rs52104873 SNP Detail

Summary

• ID
  rs52104873
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3089365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CATTTCCTCA ACTAAAGCTC CTTTCTCTGT GATTACTCCA
  GCTGTATCAA GTTGACACAA AACTAGCCAG TACAAATGAC CCTTTTCTTT CTCTCTTTCT
  C
  TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTTTCTTTT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145930135	ENSMUSSNP6248399	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52104873					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3089365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13988	CpG island 13988	752 bp proximal
Rr588148	regulatory region 588148	125 bp proximal
Tssr36318	transcription start site region 36318	175 bp upstream
Tssr36319	transcription start site region 36319	397 bp upstream
Tssr36320	transcription start site region 36320	938 bp upstream
Tssr36321	transcription start site region 36321	1017 bp upstream
Tssr36322	transcription start site region 36322	1108 bp upstream
Tssr36323	transcription start site region 36323	1306 bp upstream
Tssr36324	transcription start site region 36324	1411 bp upstream
Tssr40800	transcription start site region 40800	203 bp downstream
Tssr40801	transcription start site region 40801	429 bp downstream
Tssr40802	transcription start site region 40802	850 bp downstream
Tssr40803	transcription start site region 40803	907 bp downstream