rs52105125 SNP Detail

Summary

• ID
  rs52105125
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82906373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA AGAAATAAGA AAAATATAAC
  A
  CAGCTAACCA ACAGGATGAT TGTAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136700055	ENSMUSSNP5679854	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323044119	CHEV_9_82917927	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52105125					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82906373 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Gm57057	predicted gene, 57057	304 bp upstream
Rr401561	regulatory region 401561	397 bp downstream
Rr683838	regulatory region 683838	340 bp distal
Rr683839	regulatory region 683839	195 bp distal
Tssr90739	transcription start site region 90739	313 bp upstream