rs52105359 SNP Detail

Summary

• ID
  rs52105359
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156262876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCTCGGC CTCTGAGCTC
  TGCCTAGGCT CTGGTGGGCG TCTGTCCCAC GTGGGGGAAG CCAGCGGCGC GGGCTCGCGG
  GGCGCACACC CCTCCGAGTT CCCCTCCCTG GGATCGGACG CGCCTGCTCC TGGGCAGCTC
  GGCTCTTGGG GCCAGTGGGT CGCGCTCGCT ACTCGCACAC CCTTCGGACG CTGCCTGGCC
  S
  GGATCGCCGC CGCCTCCTCC CAGGGAGCTG GCGGGGCGGG GCAGAGGGGG AGAGGGGGTG
  TGCGGAGCGG GCGGGGAGGG GGCTGAGCGC CGTGGGAGGG AGCGAACGAG CGAGCGAGCG
  AGAGAGCGAG CGGGGCATTT CTGCGCAGCT CCGGAGCGTC TTGGAGCCTG CCTGGGCGGC
  CACTGGACGA AGGGACTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148072171	ENSMUSSNP4662145	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52105359					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156262876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	within coordinates
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21156	transcription start site region 21156	205 bp downstream
Tssr21157	transcription start site region 21157	94 bp downstream
Tssr21158	transcription start site region 21158	82 bp upstream
Tssr21159	transcription start site region 21159	96 bp upstream
Tssr21160	transcription start site region 21160	119 bp upstream
Tssr21161	transcription start site region 21161	127 bp upstream
Tssr21162	transcription start site region 21162	160 bp upstream
Tssr21163	transcription start site region 21163	173 bp upstream
Tssr21164	transcription start site region 21164	206 bp upstream