rs52105636 SNP Detail

Summary

• ID
  rs52105636
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25189540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAAAGAGAAT GAAGAAGAAA AGGAGGAGAA GAGAGGAGAG
  AAGAGGGAGA AGAGGATAAA GGTGGGGGAT ACAGAGAGGA AGGAAAAGGA AGAGGAGGAG
  K
  AAGGAGAGAA AGGAGAGAGG AAGAGGAGGA GGAGGAGGAA GAGATGGGGG ATGGGAGAAG
  CGGAGGGTGT CTCCCCACTG GTTCCTGGCA GTGGGCTTTC C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148110862	ENSMUSSNP3932645	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52105636					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25189540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			1300 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608456	regulatory region 608456			1578 bp distal
Rr608457	regulatory region 608457			533 bp distal
Rr608458	regulatory region 608458			925 bp distal
Rr608459	regulatory region 608459			788 bp distal
Rr608460	regulatory region 608460			776 bp proximal
Rr608461	regulatory region 608461			1328 bp proximal
Tssr45452	transcription start site region 45452			1298 bp upstream