rs52107059 SNP Detail

Summary

• ID
  rs52107059
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128128304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAATCTTTC TCATGTACAC ATATGCTCAC TTACACACAC
  ACACACACAC ACACACATAC TCACACACAC ACACATACTC ACACACACAC ACCACACATA
  K
  ACACATATTC ATACATAGTC ACACACACAC CACACATATT CACACCCACT CACATTCAAA
  CACCACACAC ACACACACAC ACACACACAC ACGTATCAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147556464	ENSMUSSNP70134	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52107059					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128128304 () rs orientation: forward

Symbol	Name	Function Class
Rr564691	regulatory region 564691	1020 bp distal
Rr564692	regulatory region 564692	558 bp distal
Rr564693	regulatory region 564693	1342 bp proximal