rs52107503 SNP Detail

Summary

• ID
  rs52107503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14928516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CATCTATGTA AGTCTCAGCT TAACTCATTT CTGTTCCCAA
  GCCTACCTCT CATATATGTC CATATATATA TATATATATA TATATATATA TATATATATA
  Y
  ACACACACAC ACACACACAC ACACACATAT ATATACCATC ACTGCTGACT CAATTCATCC
  TGGGTCACAA ACCCAAGACA TCCTAGTATC ATATTCTCCT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146046309	ENSMUSSNP4238087	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52107503					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14928516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	1321 bp proximal
Gm11837	predicted gene 11837	1392 bp upstream
Gm68732	predicted gene, 68732	1211 bp downstream
Rr589248	regulatory region 589248	845 bp proximal
Rr589249	regulatory region 589249	1346 bp proximal
Rr589250	regulatory region 589250	1934 bp proximal
Tssr36545	transcription start site region 36545	1344 bp upstream