rs52107667 SNP Detail

Summary

• ID
  rs52107667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16049901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATAATGA TAGTGAACTC
  ACAAGGTGGC ATCCACCACC TCGCCCAGTT GCAAGGAGGA GGAGGGCACA GGAGGCCTGG
  GCTAGTTCTG GGCATGTACT CTAATAGGGT CATTAGCCTG ACATCTTCCA AATGGATTAC
  ATTCTTCACA ACCAAGAACA TGAGCCCGGT GGATCTGCTT GGCCATAACC AGTGGAAGGA
  Y
  CAAATAAAAG CTTGCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  TCCGTTCTTC CTTCCTTCCT TTCTCCCTTC CTTTCTTTCT CTTTTCTTTT CTTTTCTTTT
  CTTTTCTTTT CTTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTCTCAC TCTCCCTCCC
  ACCCTCCCTT TCCTTCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148383665	ENSMUSSNP4402450	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52107667					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16049901 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18373	CpG island 18373	1464 bp distal
Rr167075	regulatory region 167075	1100 bp distal
Rr380460	regulatory region 380460	within coordinates
Tssr64602	transcription start site region 64602	370 bp downstream
Tssr70736	transcription start site region 70736	1989 bp upstream
Tssr70737	transcription start site region 70737	1927 bp upstream
Tssr70738	transcription start site region 70738	1913 bp upstream