rs52108078 SNP Detail

Summary

• ID
  rs52108078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12849672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTAATAT CTGAAATATA
  TAAAGAATTG TAAAAATTAA ATACTCCAAG CTAAATTATC CAATTAATAA ATGGGCTAAT
  GAACTGTCTG CTCTTCCAGG GGACCGGAGT GTGATCTCCA GCTCCTACAT GGAAAAAAAT
  AAACAGAAAT AAAAAAGAAA AAGAAGAAAT CTCAAATTAA AAAAACCAAA TTTTTTAGAA
  S
  TTTATTTATT TTCCCACTCA TGATTCTCAT GAAGTTTAGA AAATGAATGG AAGACATTAT
  ATTATTTTGG AGTTGGTTAA ATTTCACCCT TGTCTACAGT TCTGGAAATT ATACCATTTT
  AAATTTTAAC AAAATTTTAA CAAAAGTTTC AATAAATGAA AACATTCTCT TGGTGTATTT
  GCACATTGTA AGAGGTGTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146806579	ENSMUSSNP327894	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52108078					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12849672 () rs orientation: forward

Symbol	Name	Function Class
Tssr92372	transcription start site region 92372	877 bp upstream
Tssr92373	transcription start site region 92373	1775 bp upstream
Tssr96740	transcription start site region 96740	754 bp downstream
Tssr96741	transcription start site region 96741	1667 bp downstream