rs52108884 SNP Detail

Summary

• ID
  rs52108884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:76789793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTAGGCA CAGCCACACC
  TTCAGGCTGC TCAAGGGCAT GCAGACCCAG ATACTCTTAC ATCGAGTTGG TACCTAGGGA
  AGGTGACTGC TCGACCCTCA AATGAAAAAG CACATCTGAT TTGGAAGATG AATGTTTCTC
  TAATGTTTTT CATATTTGTT ATGATGTTTT CTTTAAAAAG TATAATAAAT CTCAATTTTG
  R
  AAAACACAGA AAACAGAAAT ACATAAAAAG AAGTTGAAAA TGAACAATGA GACCAATTGC
  ACTTCTGTCA TGTAAGTTGC TTCCTGCTCA TTTTCTTGAT CAAGTGTGCA GAGGCAACAT
  TTTCTCTAAA TATAGGCAGG AGTGGGTGGA TGGGAGGGGG AGCACCCTCA CAGAAGCAGG
  GGCAGGGGAG ATGGGATAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60755702	NES16392213	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52108884					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60755702	NES16392213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:76789793 () rs orientation: forward

Symbol	Name	Function Class
Gm70762	predicted gene, 70762	1440 bp upstream