rs52109583 SNP Detail

Summary

• ID
  rs52109583
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTAACAG CAACCATTTT
  CTCATCACAG AGGCAAGGCT AACTGACCTG GAAAGGAGGA GCCTGGGCTG CTGTCCCTCA
  ACGGAAGAAC CAAAGAGAAA GAAAAAAACA AACAGCACCC GGGAAGCCTG GATCGTACCT
  GATGTGCCTC GCTGTCTGAG AGTTCACTTA TTTATTTATC TATGTATTTA TTTATTTATT
  W
  ATTCCATTGC CCAGATGTTG TTATGTTTAT TTTGATATTT AAAGATATGC ATTCGCTAAT
  TCACTGTAAT ATCTTAAAAG GTCATTTTAA TATGTTAAAG TTTATTTTAA TAATGTTTAA
  TGTGTTCAAT TAAAGTTATT TAACTTATAT AGTTGGAAGG TGATAAATTT TTAAACCTAT
  TTATTCATTA GTTTCTGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198252	NES16702740	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52109583					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198252	NES16702740	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053218 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Tssr47224	transcription start site region 47224	1650 bp downstream
Tssr47225	transcription start site region 47225	1548 bp downstream
Tssr47226	transcription start site region 47226	1479 bp downstream
Tssr47227	transcription start site region 47227	1285 bp downstream
Tssr47228	transcription start site region 47228	1222 bp downstream
Tssr47229	transcription start site region 47229	1201 bp downstream
Tssr47230	transcription start site region 47230	1176 bp downstream
Tssr47231	transcription start site region 47231	1146 bp downstream
Tssr47232	transcription start site region 47232	999 bp downstream
Tssr47233	transcription start site region 47233	949 bp downstream
Tssr47234	transcription start site region 47234	914 bp downstream
Tssr47235	transcription start site region 47235	156 bp downstream
Tssr47236	transcription start site region 47236	117 bp downstream
Tssr47237	transcription start site region 47237	97 bp downstream
Tssr47238	transcription start site region 47238	38 bp downstream
Tssr47239	transcription start site region 47239	33 bp downstream
Tssr47240	transcription start site region 47240	14 bp downstream
Tssr47241	transcription start site region 47241	within coordinates
Tssr47242	transcription start site region 47242	28 bp upstream
Tssr47243	transcription start site region 47243	51 bp upstream
Tssr47244	transcription start site region 47244	85 bp upstream
Tssr47245	transcription start site region 47245	105 bp upstream
Tssr47246	transcription start site region 47246	156 bp upstream
Tssr47247	transcription start site region 47247	200 bp upstream
Tssr47248	transcription start site region 47248	263 bp upstream
Tssr47249	transcription start site region 47249	333 bp upstream
Tssr47250	transcription start site region 47250	471 bp upstream
Tssr47251	transcription start site region 47251	535 bp upstream
Tssr47252	transcription start site region 47252	587 bp upstream
Tssr51812	transcription start site region 51812	1132 bp upstream
Tssr51813	transcription start site region 51813	1115 bp upstream
Tssr51814	transcription start site region 51814	141 bp upstream
Tssr51815	transcription start site region 51815	95 bp upstream
Tssr51816	transcription start site region 51816	62 bp upstream