rs52109784 SNP Detail

Summary

• ID
  rs52109784
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191710632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGATCCAC CCATTCACTG AACCACCCAC CCACCCACCA
  CTGATCCACC TATCCACTCA TATCCCCACT TGCCCAGGCA TTCATTCGCC CATCATTACA
  S
  ATGCTGGGAT GATGGAGCTG ATGGCCTCTG AGATCCATGC CATCTCTGTG GGGAACATGA
  GGGCCAGGCT ACAGGAAGAA GTTGACTCTT AGACACTGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60361405	NES15865092	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C		G	C	C	G		C
ss320196693	CHEV_1_193802552	CHEVERUD	SCREENING_POP	f	SNP									G					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52109784					SNP	C	C	C	C	C	C	G	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361405	NES15865092	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191710632 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70534	predicted gene, 70534			487 bp upstream
Rd3	retinal degeneration 3			Intron
				mRNA-UTR
Rr426276	regulatory region 426276			1288 bp distal
Rr426277	regulatory region 426277			1106 bp distal
Rr426278	regulatory region 426278			616 bp proximal
Tssr10797	transcription start site region 10797			1282 bp downstream
Tssr10798	transcription start site region 10798			1271 bp downstream
Tssr10799	transcription start site region 10799			1226 bp downstream
Tssr10800	transcription start site region 10800			412 bp downstream
Tssr10801	transcription start site region 10801			380 bp downstream