rs52110413 SNP Detail

Summary

• ID
  rs52110413
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGTGAA GTTTATTGAG
  ATCCTCACTC AGAAAACAAA ACTTAGGGCC AGCAAGATAG CTCATGCACA AAAGGACACA
  CACGCGCGCG CGCGTGCGCG CAAATGTAAA AAGTATCCCA CTCAACCCAC GATCCCAAAA
  TGGGAAAACA AAACAAAATG AAAACAAAAC AAAACAAAAC AAAATAAAAA ACCAAAAACC
  S
  GTGATTAACA TCTGGAAGTG GTAGCCCATA GCAGTAATCT CAGCACTTGA GAAGGTAAGA
  CTGAAGACCA CATGTTTGGA CTAGTATGGG CTACATAGTA ACTTCCAGAC CAGGCTTGTA
  TGCATGACAG GGAGGACAAA GGCTCAGCCT GTAGGGTGCT TGCCTAGAGC GCACAAGGCC
  TGGGGTCTGT CTATCCCATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149135544	ENSMUSSNP1676622	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52110413					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111735 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm73429	predicted gene, 73429	848 bp upstream
Gm73431	predicted gene, 73431	661 bp downstream
Rr380754	regulatory region 380754	879 bp downstream
Rr646450	regulatory region 646450	1937 bp distal
Rr646452	regulatory region 646452	1292 bp distal
Rr646453	regulatory region 646453	859 bp distal
Rr646454	regulatory region 646454	362 bp distal
Rr646455	regulatory region 646455	728 bp proximal
Tssr66542	transcription start site region 66542	1211 bp downstream
Tssr72399	transcription start site region 72399	1365 bp upstream
Tssr72400	transcription start site region 72400	1334 bp upstream