rs52111662 SNP Detail

Summary

• ID
  rs52111662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127499263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGGCTG GAGAGAGACC
  TCAGTGCTTA GAAGAGTGCA GGGGACCAGA GTTCCATTCC AGCGCCCACA CCAGGCACGA
  GGGGATCCAA CACCTTCTCT GTGGTGCACG CACACCCACA CACACACACA CACACACACA
  CACACACACA CACACACCAC ACCAAATGTG TCTTTTTTAA AAACCTGCCG TGGTATCCTG
  R
  AGCCCATGCC TGTCTCCTGG CTACTACTTG CAGCCTGCAG GGTGCAAAGT GGTCCCCCAT
  TGACTACTAG GGTGCACATT GCCGGGTTCC AGAAGCTTCA GTGGCACTCG GACCCTGCTT
  TTCATCTGTT CAAAGAGTTA ATTTTCATCC GCTTTCTGGG ATATGTGCAG CTGGGAGTGG
  GAGCGCTCTG TCATCACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60942672	NES16167493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52111662					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60942672	NES16167493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127499263 () rs orientation: forward

Symbol	Name	Function Class
Rr147640	regulatory region 147640	within coordinates
Rr380087	regulatory region 380087	929 bp downstream