rs52111754 SNP Detail

Summary

• ID
  rs52111754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72715674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTGAGA TGCCCCACGG
  CCCCGTGATG GTGCTAGGAA CTAAACTCTG TTCTCTGCAA GAGCAGCAAG TGCTCTCTAA
  GAGGGGAGCC ATCTCTCCAG CCCGAGATGC CTGTTGTCGA TGACCTGCAC ACAGAACTGG
  ACATTCAGTA ATGGTTCTAG CCATGATCTA TCTTCTTTCT CTTTTGGCAC CTGTGTATGT
  R
  TCTCTGTGTG TGCATGTACA TGTGTATGTG TCTATGTGCA AGTCGACGTC CACGTGTGGA
  CATTCATGCA GAAGCCATGT CCAGTGCTGA TATCTTCCTC GGGTTCTCTA TTTTTTGGAG
  GCAGGGTCTC TCAGTGAACC CTCTCAATTT GGCTCATCTG ATGCCCATCA AGGCCCAGGG
  GTCCTCCTGT CTCCCCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss133286950	ENSMUSSNP1939155	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs52111754					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72715674 () rs orientation: forward

Symbol	Name	Function Class
Gm67726	predicted gene, 67726	939 bp downstream
Rr136561	regulatory region 136561	927 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates