rs52112473 SNP Detail

Summary

• ID
  rs52112473
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190704458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCCAACT CCCTGTCTGG GAGGGGAAAC AGTTCCAATG
  TGAACATATG TTCCTACGAC TTCATTCCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  W
  CTCACACACA CACACACACA CACACACACA GTTAGTGAGA GAGAGAGACA GACACTCACA
  CCCTCCCACA TAAACAGTTT CACACGCACA AACTCACAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146500538	ENSMUSSNP6275309	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52112473					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190704458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr426014	regulatory region 426014			1222 bp distal
Rr426015	regulatory region 426015			217 bp distal
Rr426016	regulatory region 426016			277 bp proximal
Vash2	vasohibin 2			Intron
				Noncoding-Transcript-Variant