rs52113790 SNP Detail

Summary

• ID
  rs52113790
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164754971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAGGCA GAAACGGGTG
  GATCTCTGTG AGTTCAAAGC CAGCCTGGTC TACAGAGTTA GTTTCAGGAC ACAAAAACCG
  TGTACTAAAA AAAAAAAAAA AAAAAAAAAA AGCGGGGCGG TGATGGCACA CTCCTTTAAT
  CCCAGCACTT GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGCCAGC CTGATCTACT
  A
  AGTGAGTTCC AGGACAGCCA GGGCTACACA GAGAAACCCT GTCTCAAAAA ATAAACAAAC
  AAAAAAAAAA GAGGAGAAGA AAAATGAATT CAGTGAAAAG GACAAGTGGC TTTGAGTTAT
  CACTAGCACC TGGACACAAG GGCTCCTACG CTCTTGTCAC AGAAAGTTCT CCCTTCCTCG
  TGTTTCCTCT TTGATAGAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148232931	ENSMUSSNP836853	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52113790					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164754971 () rs orientation: forward

Symbol	Name	Function Class
2210414I22Rik	RIKEN cDNA 2210414I22 gene	118 bp downstream
Cpgi12677	CpG island 12677	686 bp distal
Rr367365	regulatory region 367365	834 bp downstream
Rr569761	regulatory region 569761	1657 bp distal
Rr569762	regulatory region 569762	1702 bp distal
Rr569763	regulatory region 569763	1305 bp distal
Rr569764	regulatory region 569764	1321 bp distal
Rr569765	regulatory region 569765	804 bp distal
Rr569766	regulatory region 569766	1133 bp distal
Rr569767	regulatory region 569767	68 bp proximal
Tssr21686	transcription start site region 21686	1596 bp downstream
Tssr27593	transcription start site region 27593	1841 bp upstream
Tssr27594	transcription start site region 27594	1812 bp upstream
Tssr27595	transcription start site region 27595	1752 bp upstream
Tssr27596	transcription start site region 27596	1468 bp upstream
Tssr27597	transcription start site region 27597	1443 bp upstream
Zfp335	zinc finger protein 335	mRNA-UTR
Zfp335os	zinc finger protein 335, opposite strand	within coordinates