rs52113791 SNP Detail

Summary

• ID
  rs52113791
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102335764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACCTGTTCAT GCTTTGGTGT CAAAAGCACT ACTTAAAGCT
  ACAGAAAACC AAAAAAACCC CCAAACAACA ACAACAACAA CAACAACAAC AACAACAACA
  A
  CAACAACAAC AACCAGACAA AACAGCAGAT GAAAATTTGG AAGACACTGG CAGTAGGAAA
  GCGAGGCAAA GAAAGATAGA AATGATAAAT CAAGATAAAT C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145571398	ENSMUSSNP3805714	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52113791					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102335764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	417 bp proximal
Gm45527	predicted gene 45527	338 bp upstream
Rr652623	regulatory region 652623	84 bp proximal
Rr652624	regulatory region 652624	703 bp proximal
Trim68	tripartite motif-containing 68	within coordinates
Tssr73953	transcription start site region 73953	695 bp downstream