rs52113985 SNP Detail

Summary

• ID
  rs52113985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49011836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAACGAGT GACTTTGCCT
  TGAAGAAATC CAAGATGGAT GACTCCTGCA GAGATGACAT CTGAAGTTGA CCTCTGGCCT
  ACACTTATAC ACCAATTTCC ACACTAAATC CCTCTTATGC ACCCCAGCAG ACACACAAGA
  ACCTTGTCCT TGGGACACCA TTCTCTATGC TACACTATGC CATTTCACCT GGAGGGACTG
  Y
  TACTTGGCAG AAGGTGTCCA AACTCTTGTT TGTTTGTTTT TTGTTTTGTT TTGTTTTTGG
  TTTTGTTTTG TTTTGTTTTG TTTTGTTTTG TTTTGTTTTG TTTTGTTTTG TTTTGGTTTG
  GTTTGGTTTG GTTTGGTTTG GTTTGGTTTG GTTTTTTGAG ACAGGGTTTC TCTGTGTTGC
  CCTGGCTGTC CTGGAACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62763260	NES17343758	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52113985					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62763260	NES17343758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49011836 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr13	DNA Segment, Chr 17, Derry C. Roopenian 13	1504 bp proximal
D17Mit178	DNA segment, Chr 17, Massachusetts Institute of Technology 178	1504 bp proximal