rs52114356 SNP Detail

Summary

• ID
  rs52114356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACACTGTC TCGAAAAAAC AAAAACAAAC AACCCCCCCA
  AAACTAAACA AAACAACAAC AAAAAACTTG TTAAGGTTGT TTAAAAGAGA AAGAATCATA
  Y
  CTTTTATTTA TCATTTAATT CATATGTTAG TGTGATACTT GTCTATGCAT ATGTGTATAG
  ACATGAATGT CTACATGGAG ACTAGAGGAA TACAGTGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss132135286	ENSMUSSNP1218082	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52114356					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	1244 bp proximal
Gm30927	predicted gene, 30927	1854 bp upstream
Rr447212	regulatory region 447212	295 bp distal
Rr447213	regulatory region 447213	1070 bp proximal
Rr447214	regulatory region 447214	1743 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1848 bp upstream
Tssr101465	transcription start site region 101465	1867 bp upstream
Tssr107965	transcription start site region 107965	1710 bp downstream
Tssr107966	transcription start site region 107966	1772 bp downstream