rs52114586 SNP Detail

Summary

• ID
  rs52114586
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9035124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGAAAGAGTT TTGGCTCACA GATTTGGTGA ACTCTCTCAT
  CGTGCAGGCT GCCCAGCTTA CAGCTGAAAG CCAGGAAGGA GAGAGAGAGA GAGAGAGAGA
  K
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG CGCTGGGGTC CCATGATTCC CTTGAAAGGA
  ACACTCTCCA TGACCTGGTG TCTCCGTGCG GTATTCAACG C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134570788	ENSMUSSNP2762237	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52114586					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9035124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr573351	regulatory region 573351			912 bp distal
Rr573352	regulatory region 573352			1375 bp distal
Rr573353	regulatory region 573353			1199 bp distal
Rr573354	regulatory region 573354			208 bp distal
Rr573355	regulatory region 573355			74 bp proximal
Rr573356	regulatory region 573356			1174 bp proximal
Tpd52	tumor protein D52			Intron
				Noncoding-Transcript-Variant