rs52114680 SNP Detail

Summary

• ID
  rs52114680
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118619269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCACTGCCCC ATATGTGTTG TTTTTTGTTT GTTTGTTTGG
  TTGGTTGGTT GGTTTTCTTT GTTTTTGTTT TTGTTTTTTG TTTTTTGTTT TTTGTTTTTT
  G
  GTTTTTTGTT TTTTGTGTGT GTGTGCTGGG GATCAAACTT AGATACTTGA ATGGACTAAG
  TACATGCTCT ATTACTGAGC TACATCCTCA GCCCTGTAAA T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147313031	ENSMUSSNP5225273	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52114680					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118619269 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12093	CpG island 12093			1502 bp proximal
Disp2	dispatched RND transporter family member 2			Intron
				mRNA-UTR
Rr563341	regulatory region 563341			1850 bp proximal