rs52115355 SNP Detail

Summary

• ID
  rs52115355
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:41865556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC CCTAGCGTCA CTCAAAAGAC
  C
  TCCCGTCCCC GCTCCAACCA TCACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148314819	ENSMUSSNP3938794	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52115355					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:41865556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15822	CpG island 15822	within coordinates
Gm72243	predicted gene, 72243	23 bp upstream
Gm72274	predicted gene, 72274	598 bp downstream
Rab28	RAB28, member RAS oncogene family	56 bp upstream
Rr399068	regulatory region 399068	within coordinates
Rr610697	regulatory region 610697	1072 bp distal
Rr610698	regulatory region 610698	103 bp distal
Rr610699	regulatory region 610699	within coordinates
Rr610700	regulatory region 610700	330 bp proximal
Tssr46070	transcription start site region 46070	1035 bp downstream
Tssr50838	transcription start site region 50838	1297 bp upstream
Tssr50839	transcription start site region 50839	784 bp upstream
Tssr50840	transcription start site region 50840	532 bp upstream
Tssr50841	transcription start site region 50841	199 bp upstream
Tssr50842	transcription start site region 50842	84 bp upstream
Tssr50843	transcription start site region 50843	43 bp upstream