rs52116070 SNP Detail

Summary

• ID
  rs52116070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29299679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAT ATGAGGGAGA GAGCCGGCAT
  Y
  TCGAAGAGTC CAGAGCAGAG GGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60559217	NES16575498	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C	C	T	T	C		C	T	T	C		T
ss325352862	CHEV_17_29217650	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52116070					SNP	T	C	C	T	C	C	C	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559217	NES16575498	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29299679 () rs orientation: forward

Symbol	Name	Function Class
Rr370203	regulatory region 370203	1295 bp upstream
Rr392491	regulatory region 392491	770 bp downstream
Rr524787	regulatory region 524787	1725 bp distal
Rr524788	regulatory region 524788	1164 bp distal
Rr524789	regulatory region 524789	within coordinates
Trp53cor1	tumor protein p53 pathway corepressor 1	1579 bp upstream
Tssr143493	transcription start site region 143493	871 bp upstream
Tssr147171	transcription start site region 147171	1864 bp upstream
Tssr147172	transcription start site region 147172	1761 bp upstream
Tssr147173	transcription start site region 147173	1733 bp upstream
Tssr147174	transcription start site region 147174	1711 bp upstream
Tssr147175	transcription start site region 147175	1664 bp upstream
Tssr147176	transcription start site region 147176	1630 bp upstream
Tssr147177	transcription start site region 147177	1572 bp upstream
Tssr147178	transcription start site region 147178	117 bp downstream